Mrnjavac N, Nagies FSP, Wimmer JLE, Kapust N, Knopp MR, Trost K, Modjewski L, Bremer N, Mentel M, Degli Esposti M, Mizrahi I, Allen JF, Martin WF: Inhibition of enzymes by O2 altered the course of evolution and Earth history. in press (2023).
Brueckner J, Martin WF: Bacterial genes outnumber archaeal genes in eukaryotic genomes. Genome Biol Evol 12:282–292 (2020).
Preisner H, Karin EL, Poschmann G, Stühler K, Pupko T, Gould S: The cytoskeleton of parabasalian parasites comprises proteins that resemble intermediate filament proteins. Protist 167:526–543 (2016).
Weiss MC, Sousa FL, Mrnjavac N, Neukirchen S, Roettger M, Nelson-Sathi S, Martin WF: The physiology and habitat of the last universal common ancestor. Nat Microbiol 1:16116 (2016).
Ku C, Nelson-Sathi S, Roettger M, Sousa FL, Lockhart PJ, Bryant D, Hazkani-Covo E, McInerney JO, Landan G, Martin WF: Endosymbiotic origin and differential loss of eukaryotic genes. Nature 524:427–432 (2015).
Ku C, Nelson-Sathi S, Roettger M, Garg S, Hazkani-Covo E, Martin WF: Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes. Proc Natl Acad Sci USA, 112:10139–10146 (2015).
Nelson-Sathi S, Sousa FL, Roettger M, Lozada-Chávez N, Thiergart T, Janssen A, Bryant D, Landan G, Schönheit P, Siebers B, McInerney JO, Martin WF: Origins of major archaeal clades correspond to gene acquisitions from bacteria. Nature 517:77–80 (2015).
List J-M, Nelson-Sathi S, Martin WF, Geisler H: Using phylogenetic networks to model Chinese dialect history. LDC 4:222–252 (2014).
Dagan T, et. al.: Genomes of stigonematalean cyanobacteria (Subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids. Genome Biol Evol 5:31–44 (2013).
Nelson-Sathi S, Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF: Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proc Natl Acad Sci USA 109:20537–20542 (2012).
Thiergart T, Landan G, Schenk M, Dagan T, Martin WF: An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol Evol 4:466–485 (2012).
Kloesges T, Popa O, Martin W, Dagan T: Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths. Mol Biol Evol 28:1057–1074 (2011).
Nelson-Sathi S, List JM, Geisler H, Fangerau H, Gray RD, Martin W, Dagan T: Networks uncover hidden lexical borrowing in Indo-European language evolution. Proc R Soc Lond B 278:1794–803 (2011).
Popa O, Hazkani-Covo E, Landan G, Martin W, Dagan T: Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes. Genome Res 21:599–609 (2011).
Waegele et al.: Transcriptomic evidence that longevity of acquired plastids in the photosynthetic slugs Elysia timida and Plakobranchus ocellatus does not entail lateral transfer of algal nuclear genes. Mol Biol Evol 28:699–706 (2011).
Woehle C, Dagan T, Martin WF, Gould SB: Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biol Evol 3:1220–1230 (2011).
Bogumil D, Dagan T: Chaperonin-dependent accelerated aubstitution rates in prokaryotes. Genome Biol Evol 2:602–608 (2010).
Dagan T, Artzy-Randrup Y, Martin W: Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci USA 105:10039–10044 (2008).
